Publications
Metabolomics
Metabolomics Techniques
Abzer K. Pakkir Shah, Axel Walter, Filip Ottosson, …, Pieter Dorrestein, Jan Stanstrup, Robin Schmid, Mingxun Wang, Allegra Aron, Madeleine Ernst, Daniel Petras. Statistical Analysis of Feature-Based Molecular Networking Results from Non-Targeted Metabolomics Data. Nature Protocols. 2025; 20(1):92–162. DOI
Jan Stanstrup, Lars Ove Dragsted. QC4Metabolomics: Real-Time and Retrospective Quality Control of Metabolomics Data. Analytical Chemistry. 2025;. DOI PDF
Giorgia La Barbera, Katrine Dalmo Nommesen, Catalina Cuparencu, Jan Stanstrup, Lars Ove Dragsted. A Comprehensive Database for DNA Adductomics. Frontiers in Chemistry. 2022; 10:908572. DOI PDF
Johannes Rainer, Andrea Vicini, Liesa Salzer, Jan Stanstrup, Josep M. Badia, Steffen Neumann, Michael A. Stravs, Vinicius Verri Hernandes, Laurent Gatto, Sebastian Gibb, …. A Modular and Expandable Ecosystem for Metabolomics Data Annotation in R. Metabolites. 2022; 12(2):173. DOI PDF
Dorrain Yanwen Low, Pierre Micheau, Ville Mikael Koistinen, …, Senem Kamiloglu, Sonia de Pascual-Teresa, Stéphanie Durand, Wieslaw Wiczkowski, Maria Rosário Bronze, Claudine Manach, Jan Stanstrup. Data Sharing in PredRet for Accurate Prediction of Retention Time: Application to Plant Food Bioactive Compounds. Food Chemistry. 2021; 357:129757. DOI
Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Rainer, Reza M. Salek, …. The MetaRbolomics Book. 2019. Link
Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Rainer, Reza M. Salek, …. The metaRbolomics Toolbox in Bioconductor and Beyond. Metabolites. 2019; 9(10). DOI PDF
Luca Narduzzi, Jan Stanstrup, Fulvio Mattivi, Pietro Franceschi. The Compound Characteristics Comparison (CCC) Approach: A Tool for Improving Confidence in Natural Compound Identification. Food Additives & Contaminants, Part A. 2018; 35(11):2145–2157. DOI
Jan Stanstrup, Steffen Neumann, Urška Vrhovšek. PredRet: Prediction of Retention Time by Direct Mapping between Multiple Chromatographic Systems. Analytical Chemistry. 2015; 87(18):9421–9428. DOI PDF
Jan Stanstrup, Michael Gerlich, Lars Ove Dragsted, Steffen Neumann. Metabolite Profiling and beyond: Approaches for the Rapid Processing and Annotation of Human Blood Serum Mass Spectrometry Data. Analytical and Bioanalytical Chemistry. 2013; 405(15):5037–5048. DOI
Nutritional Metabolomics
Cătălina Cuparencu, Tuğçe Bulmuş-Tüccar, Jan Stanstrup, Giorgia La Barbera, Henrik M. Roager, Lars O. Dragsted. Towards Nutrition with Precision: Unlocking Biomarkers as Dietary Assessment Tools. Nature Metabolism. 2024; 6(8):1438–1453. DOI
Francesca Fava, Maria M. Ulaszewska, Matthias Scholz, Jan Stanstrup, Lorenzo Nissen, Fulvio Mattivi, Joan Vermeiren, Douwina Bosscher, Carlo Pedrolli, Kieran M. Tuohy. Impact of Wheat Aleurone on Biomarkers of Cardiovascular Disease, Gut Microbiota and Metabolites in Adults with High Body Mass Index: A Double-Blind, Placebo-Controlled, Randomized Clinical Trial. European Journal of Nutrition. 2022; 61(5):2651–2671. DOI PDF
Maria M. Ulaszewska, Athanasios Koutsos, Kajetan Trošt, Jan Stanstrup, Mar Garcia-Aloy, Matthias Scholz, Francesca Fava, Fausta Natella, Cristina Scaccini, Urska Vrhovsek, …. Two Apples a Day Modulate Human:Microbiome Co-Metabolic Processing of Polyphenols, Tyrosine and Tryptophan. European Journal of Nutrition. 2020; 59(8):3691–3714. DOI
Kajetan Trošt, Maria M. Ulaszewska, Jan Stanstrup, Davide Albanese, Carlotta De Filippo, Kieran M. Tuohy, Fausta Natella, Cristina Scaccini, Fulvio Mattivi. Host: Microbiome Co-Metabolic Processing of Dietary Polyphenols – An Acute, Single Blinded, Cross-over Study with Different Doses of Apple Polyphenols in Healthy Subjects. Food Research International. 2018; 112:108–128. DOI
Pingping Jiang, Alessia Trimigno, Jan Stanstrup, Bekzod Khakimov, Nanna Viereck, Søren Balling Engelsen, Per Torp Sangild, Lars Ove Dragsted. Antibiotic Treatment Preventing Necrotising Enterocolitis Alters Urinary and Plasma Metabolomes in Preterm Pigs. Journal of Proteome Research. 2017; 16(10):3547–3557. DOI
Pingping Jiang, Jan Stanstrup, Thomas Thymann, Per Torp Sangild, Lars Ove Dragsted. Progressive Changes in the Plasma Metabolome during Malnutrition in Juvenile Pigs. Journal of Proteome Research. 2016; 15(2):447–456. DOI
Maria M. Ulaszewska, Kajetan Trost, Jan Stanstrup, Kieran M. Tuohy, Pietro Franceschi, Mary Foong-Fong Chong, Trevor George, Anne Marie Minihane, Julie A. Lovegrove, Fulvio Mattivi. Urinary Metabolomic Profiling to Identify Biomarkers of a Flavonoid-Rich and Flavonoid-Poor Fruits and Vegetables Diet in Adults: The FLAVURS Trial. Metabolomics. 2016; 12(2):32. DOI
Jan Stanstrup. Metabolomics Investigation of Whey Intake: Discovery of Markers and Biological Effects Supported by a Computer-Assisted Compound Identification Pipeline. 2014. PhD Thesis. University of Copenhagen PDF
Jan Stanstrup, Jakob E. Rasmussen, Christian Ritz, Jens Holmer-Jensen, Kjeld Hermansen, Lars Ove Dragsted. Intakes of Whey Protein Hydrolysate and Whole Whey Proteins Are Discriminated by LC–MS Metabolomics. Metabolomics. 2014; 10(4):719–736. DOI
Jan Stanstrup, Simon S. Schou, Jens Holmer-Jensen, Kjeld Hermansen, Lars O. Dragsted. Whey Protein Delays Gastric Emptying and Suppresses Plasma Fatty Acids and Their Metabolites Compared to Casein, Gluten, and Fish Protein. Journal of Proteome Research. 2014; 13(5):2396–2408. DOI
K. Trost, M. Ulaszewska, J. Stanstrup, F. Natella, C. Scaccini, F. Mattivi. PP163-MON: Metabolic Transformation of Apple Polyphenols in Human Body. Clinical Nutrition. 2014; 33:S189-S190. DOI
Agricultural Metabolomics
Daniela Eisenstecken, Jan Stanstrup, Peter Robatscher, Christian W. Huck, Michael Oberhuber. Fatty Acid Profiling of Bovine Milk and Cheese from Six European Areas by GC-FID and GC-MS. International Journal of Dairy Technology. 2021; 74(1):215–224. DOI
Gregorio Barba-Espín, Shih-Ti Chen, Sara Agnolet, Josefine Nymark Hegelund, Jan Stanstrup, Jan H Christensen, Renate Müller, Henrik Lütken. Ethephon-Induced Changes in Antioxidants and Phenolic Compounds in Anthocyanin-Producing Black Carrot Hairy Root Cultures. Journal of Experimental Botany. 2020; 71(22):7030–7045. DOI
Katja Šuklje, Silvia Carlin, Jan Stanstrup, Guillaume Antalick, John W. Blackman, Campbell Meeks, Alain Deloire, Leigh M. Schmidtke, Urska Vrhovsek. Unravelling Wine Volatile Evolution during Shiraz Grape Ripening by Untargeted HS-SPME-GC GC-TOFMS. Food Chemistry. 2019; 277:753–765. DOI
Silvia Ruocco, Marco Stefanini, Jan Stanstrup, Daniele Perenzoni, Fulvio Mattivi, Urska Vrhovsek. The Metabolomic Profile of Red Non- V. Vinifera Genotypes. Food Research International. 2017; 98:10–19. DOI
Margaret E. Beckner Whitener, Jan Stanstrup, Valeria Panzeri, Silvia Carlin, Benoit Divol, Maret Du Toit, Urska Vrhovsek. Untangling the Wine Metabolome by Combining Untargeted SPME–GCxGC-TOF-MS and Sensory Analysis to Profile Sauvignon Blanc Co-Fermented with Seven Different Yeasts. Metabolomics. 2016; 12(3):53. DOI
Luca Narduzzi, Jan Stanstrup, Fulvio Mattivi. Comparing Wild American Grapes with Vitis Vinifera: A Metabolomics Study of Grape Composition. Journal of Agricultural and Food Chemistry. 2015; 63(30):6823–6834. DOI
Structure Elucidation from Natural Products
Jan Stanstrup, Jeppe S. Schmidt, Hasse B. Rasmussen, Per Mølgaard, Alfonso Guzmán, Dan Staerk. Bisbenzylisoquinoline Alkaloids as Markers of Atherospermataceae: Tetrandrine and Fangchinoline from Laureliopsis Philippiana. Biochemical Systematics and Ecology. 2010; 38(3):450–453. DOI
Jan Stanstrup, Anne-Mette Rusch, Sara Agnolet, Hasse B. Rasmussen, Per Mølgaard, Johannes Van Staden, Gary I. Stafford, Dan Staerk. Itoside a and 4-Hydroxytremulacin from Dovyalis Caffra and Dovyalis Zeyheri. Biochemical Systematics and Ecology. 2010; 38(3):346–348. DOI
Non-metabolomics nutrition
Inge Tetens, Majbritt Hybholt Hare, Caroline Filskov Petersen, Jan Stanstrup, Mette Friberg Hitz. The Postprandial Calcium Absorption of a Milk-Derived Calcium Permeate - the Acute RENEW Double-Blinded Randomized Controlled Cross-over Study. Journal of Nutrition. 2023; 153(12):3430–3438. DOI